Plant MITE

SE3810240

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_8558
Solanum tuberosum
SE3810240
Tc1/Mariner
St19
PGSC0003DMB000000594:100162-100448
TA
TACTCCTTTTATTTCATATTTACTGAATTTGTGAG

Secondary structure and sequence

TSD TIR

5'

3'

     C              TAC       G    -------------  AGTGCGCACATATTAAAAAAATATTCAATGAAATAATTTAAACCATAATTTCCACTACTGCCCTTTGTAAAATCATAAATATAACTTTATAAGTAGTGTA
TACTC TTTTATTTCATATT   TGAATTT TGAG             GC                                                                                                    
||||| ||||||||||||||   ||||||| ||||             ||                                                                                                     
ATGAG GAGATAAGGTATAA   ATTTAAA ACTC             AA                                                                                                    
     A              TTA       A    TTAAAAAATTAAC  GTTTTATTAACTTAACAAGTTTCAAGTTCTACCTACAAACTTTGAAAAAGGTATAAACGGGAAAGTAAATAATCTGAAAATATAAAAGATCGTCTATTTA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3810240

TACTCCTTTTATTTCATATTTACTGAATTTGTGAGGCAGTGCGCACATATTAAAAAAATATTCAATGAAATAATTTAAACCATAATTTCCACTACTGCCCTTTGTAAAATCATAAATATAACTTTATAAGTAGTGTAATTTATCTGCTAGAAAATATAAAAGTCTAATAAATGAAAGGGCAAATATGGAAAAAGTTTCAAACATCCATCTTGAACTTTGAACAATTCAATTATTTTGAACAATTAAAAAATTCTCAAAAATTTAATTAATATGGAATAGAGAGAGTA

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