SE3830242

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_8560
  • Solanum tuberosum
  • SE3830242
  • hAT
  • Hat21
  • chr08:30959024-30959202
  • GTGGAGGG
  • GGCAGTGTTCAGG

Secondary structure and sequence

TSD    TIR
5'



3' 
GTGGAG G           --------            GGAAAAAAGCGATAAGGCCCCGCTTCATGCTTTAAGCGATGAAGCGCTCACATA
      G CAGTGTTCAGG        GAAGCGTGAAGC                                                      
      | |||||||||||        ||||||||||||                                                      C
      T GTCACAAGTCC        GCGAAGTAGCGA                                                      
GGGAGG G           TTTCGCTC            ATTTCGCTACTTCGCTTCGCTACGCTCGGAAGATGCGAAGTGTCTGATCTTACT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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