SE3850244

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_8562
  • Solanum tuberosum
  • SE3850244
  • PIF/harbinger
  • To6
  • PGSC0003DMB000000195:541690-541925
  • TTA
  • AGGGGTCGTTTGGT

Secondary structure and sequence

TSD    TIR
5'



3' 
TT              GTGAGAGATAAAAATAATAGTGA     -    ----A      T ATGGAATAAAATTTTTGTATCTTGTTTGGTTGTCATATTTGGGATAACTTATCCCACCATTTATATCATA
  AGGGGTCGTTTGGT                       TGGGA TAAG     AAATAG G                                                                      
  ||||||||||||||                       ||||| ||||     |||||| |                                                                      G
  TCCCCAGCAAACCA                       ACCCT GTTC     GGTCCT A                                                                      
AT              -----------------------     T    AATAA      - ATCAATAGGACCCCAATAGATAGGACCCTATTGAATAGTGTGGTACGTATACTCTATTGAATAGGGTAGT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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