SE3840245

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_8563
  • Solanum tuberosum
  • SE3840245
  • CACTA
  • Ca1
  • chr06:8710109-8710332
  • TAG
  • GCACTACATCAAAATGATTTTTAG

Secondary structure and sequence

TSD    TIR
5'



3' 
TA        T     -          CAACAATTAATTAATGACAA     - ATTTGCAGCTAAATATGTAACTTTAGCGACAATTAGCAGTCTTTATATATGTCCCTGAAGCCTTAAGT
  GCACTACA CAAAA TGATTTTTAG                    TAGCT C                                                                    
  |||||||| ||||| ||||||||||                    ||||| |                                                                    G
  TGTGATGT GTTTT GTTGAAAATC                    CCGTT T                                                                    
GA        T     T          -------------------A     G TTATATGTGTAATAATTTCTCACGATTTAAGAAATGGCCGTAATCAATTCACAACAAACTAGGTTACA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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