SE3820246

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_8564
  • Solanum tuberosum
  • SE3820246
  • Mutator
  • M8
  • chr06:38859502-38859826
  • TTGTATAAA
  • TTGTATAAAGGTATAATACATAAATATGCCCTTTAAATTTGCCTCATTTTATATTTATGTCCTCCAACTTTGAGTGTGCACAAGTAGACACTTAAACTTGTATAAAATTGAACAAATAGTCACACATGTCCTAAGTGGCATCCTACATGG

Secondary structure and sequence

TSD    TIR
5'



3'
         A                           A  T                      T         A                                          A   T    CAT      A       --CC       CAAT      C
 TTGTATAA GGTATAATACATAAATATGCCCTTTAA TT GCCTCATTTTATATTTATGTCC CCAACTTTG GTGTGCACAAGTAGACACTTAAACTTGTATAAAATTGAACAA TAG CACA   GTCCTA GTGGCAT    TACATGG    TTGCGT 
 |||||||| ||||||||||||||||||||||||||| || |||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||| ||| ||||   |||||| |||||||    |||||||    |||||| C
 AATATGTT CCGTATTATGTATTTATACGGGAAATT AA CGGAGTAAAGTGTAAATATAGG GGTTGAAAC CACACGTGTTTATCTGTGAATTTGAACATATTTTAACTTGTT ATC GTGT   CAGGAT CACCGTA    GTGTATC    GGTGCA 
A        -                           G  C                      T         C                                          C   T    ACT      A       TTTT       CTGT      T

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End