SE3850247

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_8565
  • Solanum tuberosum
  • SE3850247
  • PIF/harbinger
  • To5
  • chr03:22387511-22387955
  • TAA
  • AGGGGTCGTTTGGTAGAGTGTATAAG

Secondary structure and sequence

TSD    TIR
5'



3' 
TA        TTT            A  AATA     AAATAGAGTGTATTAGTAATGCATGTATTAGTTATGCTTGCATTAGTTATACATATATTATCTTTATGCATTGTTTGGTTTGATGCATTTAAAAAATAGCATGCATTGCATACAAAAATTTAATTTACAAAGATAGTCTCCACTATTATGGTAGAAAAGATGTAAAAAGGATTTTGAGGGGCAAT
  AGGGGTCG   GGTAGAGTGTAT AG    ATACT                                                                                                                                                                                         
  ||||||||   |||||||||||| ||    |||||                                                                                                                                                                                         T
  TCCCCAGC   CCATCTCACATA TC    TTATT                                                                                                                                                                                         
AA        CAT            A  CTTT     ACGTACATAATTGGAACACAGAATGATCATGGAACAAACCATAAGAAAAGGTTGGATACATATTGATTATGAATGTAATTAATATACGAGATAACAAATAATTCCACACATAAAGATTATGGAGACTAAAGATCCATAATCGTTACGTTACCAAAATTACGTACGTAATCGTACTAATTTCTGGG
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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