Plant MITE

SE3810253

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_8571
Solanum tuberosum
SE3810253
Tc1/Mariner
St1
chr03:44789814-44790092
TA
TACTCCCTCTGTCCCTAATTACTTGTCCACTTTT

Secondary structure and sequence

TSD TIR

5'

3'

             C                    GAATTGACAC    --    AGAAA    ----   TTG  ATAGTG  TTTACCATTTTATCCCTATTAATTATGAAGTGGATAGATTAAAAATTTAAGATTTTCAAGAAATTCTAC
TACTCCCTCTGTC CTAATTACTTGTCCACTTTT          ACCT  ATTA     TCAA    TTA   AC      AG                                                                     
||||||||||||| ||||||||||||||||||||          ||||  ||||     ||||    |||   ||      ||                                                                     C
ATGAGGGAGACAG GATTAATGAACAGGTGAAAA          AATA  AACA     GGGA    TGA   AC      AG                                                                     
             A                    ------GGAA    TC    -----    TTAA   ---  ------  GTAAAACTGTTTAGTTCTTTCCTGTTTTTATTAAAATGGATAATATGGAAGTTAATTAATGAAACTTTT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3810253

TACTCCCTCTGTCCCTAATTACTTGTCCACTTTTGAATTGACACACCTATTAAGAAATCAATTATTGACATAGTGAGTTTACCATTTTATCCCTATTAATTATGAAGTGGATAGATTAAAAATTTAAGATTTTCAAGAAATTCTACCTTTTCAAAGTAATTAATTGAAGGTATAATAGGTAAAATTATTTTTGTCCTTTCTTGATTTGTCAAAATGGACAAGTAATTAGGGACAACTATAAAAGGAAAAGTGGACAAGTAATTAGAGACAGAGGGAGTA

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