SE3820256

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_8574
  • Solanum tuberosum
  • SE3820256
  • Mutator
  • M6
  • chr07:42579097-42579442
  • TTACTTTTG
  • GGGATAAGGGTCTGAAAAATACCTCAACTTTGGTCGAATTTGCTGTTGTGATACTAAACTTTCATGAGGACCTATTACCTCCCTAGACTATTTAATACCGTATTTTAAAC

Secondary structure and sequence

TSD    TIR
5'



3' 
 TTACTTTT           C                        A                                                                     AA  A     --  T   CCACGTGGACATAAAAAATAATGCAAAATTATAAATAGTAAT
         GGGATAAGGGT TGAAAAATACCTCAACTTTGGTCG ATTTGCTGTTGTGATACTAAACTTTCATGAGGACCTATTACCTCCCTAGACTATTTAATACCGTATTTT  AC TATAT  AT TGC                                          
         ||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  || |||||  || |||                                          G
         CCCTATTCCCA ACTTTTTATGGGGTTGAAACCAGC TAAACGACAACGCTATGATTTGAAAGTACTCCTGGATAATGGAGGGATTTGATAAATTATGGCATAAAA  TG GGGGA  TG ATA                                          
TTTTCATTT           A                        C                                                                     AA  -     CT  -   AATTATCACATAAAATTTCCATATATACACGGGTGCACCTGT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

Copyright ©.   Contact us: contact@pmite.com   京ICP备2022028499号-3