Plant MITE

SE3830257

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_8575
Solanum tuberosum
SE3830257
hAT
Hat34
chr05:5200041-5200366
TGTCCTAC
TGTCCTACACAGAGGCGAAT

Secondary structure and sequence

TSD TIR

5'

3'

   CCT  A   A       ---------------   G  TTTCAAGAAAACGGGTGCACCATTGCTTTAGAATTTCATTTTTTTTTTTGAAAAAACGAGTGTAGTAGTTACTAAAAAAATTTGAAGTGAATTGTGGCTGGTTGGGATTGAACTCAGGACCTTGGTGTTA
TGT   AC CAG GGCGAAT               CCA GA                                                                                                                                  
|||   || ||| |||||||               ||| ||                                                                                                                                  A
ACA   TG GTC CCGCTTA               CCC AG                                                                                                                                  
   TCC  -   A       AATACATATTTTAAA   -  TAGGCTTGGGCACCAGGAGGCTGATTTGAGCTATATAATGAACATATTAATAATTTCTTGTATAATTTATTTGTGAACAACTTGGGCAAGAATTTCAACGATCTACCAAGTGACCAAACTGTCGGTCTAA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3830257

TGTCCTACACAGAGGCGAATCCAGGATTTCAAGAAAACGGGTGCACCATTGCTTTAGAATTTCATTTTTTTTTTTGAAAAAACGAGTGTAGTAGTTACTAAAAAAATTTGAAGTGAATTGTGGCTGGTTGGGATTGAACTCAGGACCTTGGTGTTAAAATCTGGCTGTCAAACCAGTGAACCATCTAGCAACTTTAAGAACGGGTTCAACAAGTGTTTATTTAATATGTTCTTTAATAATTATACAAGTAATATATCGAGTTTAGTCGGAGGACCACGGGTTCGGATGACCCAAATTTTATACATAAATTCGCCACTGGTCCTACA

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