SE3820259

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_8577
  • Solanum tuberosum
  • SE3820259
  • Mutator
  • M8
  • PGSC0003DMB000001060:17520-17845
  • CAAAAAGTA
  • GGCATAATACATAAATATGCCCTTTAACTTGGCTTCA

Secondary structure and sequence

TSD    TIR
5'



3' 
CAAAAAGTA                A                    AATC  A    G C       C   C           A      C      ATT               A    C   CTT              CC       CATTTTTT    CTA
         GGCATAATACATAAAT TGCCCTTTAACTTGGCTTCA    AC TTTA G CCTTCAA TTT GGTGTGCACAA TAGACA TTAAAT   TATAAAGTTGAACAA TAGA ACA   GTCTTACATGGCAT  TACATGT        TATC   
         |||||||||||||||| ||||||||||||||||||||    || |||| | ||||||| ||| ||||||||||| |||||| ||||||   ||||||||||||||| |||| |||   ||||||||||||||  |||||||        ||||    
         CCGTATTATGTATTTA ACGGGAAATTGAACCGGAGT    TG AAAT C GGAAGTT AAA CCATACGTGTT ATCTGT AATTTG   ATATTTCAACTTGTT ATCT TGT   CAGGATGTACCGTA  ATGTACA        ATGG   
ATGAAAAAC                C                    AAAA  C    A A       A   C           C      A      AAC               C    A   ACT              AT       ----TCCT    TAC
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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