SE3820260

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_8578
  • Solanum tuberosum
  • SE3820260
  • Mutator
  • M6
  • chr12:40772995-40773341
  • TAAAAAATA
  • TAGGGATAAGGGTCTGAAAAATACCTCAACTTTGGTTGGATTTGCTGTTGCGATACTAAACTTTCATAAGGAACTATTACCTCCCTAGACTATTTAATACT

Secondary structure and sequence

TSD    TIR
5'



3' 
TAAAAAA                                            C                      A    A                               TTTTTTACCACCTGAACTATTTAATAGTGTATTTTAAAGGTATATATGTGCCCACGTGGACA
       TAGGGATAAGGGTCTGAAAAATACCTCAACTTTGGTTGGATTTG TGTTGCGATACTAAACTTTCAT AGGA CTATTACCTCCCTAGACTATTTAATACTGTA                                                              
       |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||                                                              C
       ATCCCTATTCCCAGACTTTTTATGGGGTTGAAACCAGCTTAAAC ACAACGCTATGATTTGAAAGTA TCCT GATAATGGAGGGATCTGATAAATTATGGCAT                                                              
ATAAAAA                                            A                      C    G                               AAAATTTGTATATATAAACGGGTGCACCTGTATTTTTTATTACGTTTTAATATTTATCATTA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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