SE3830262

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_8580
  • Solanum tuberosum
  • SE3830262
  • hAT
  • Hat35
  • chr06:33888721-33889277
  • CCACAGAT
  • TGCAGAGGCGT

Secondary structure and sequence

TSD    TIR
5'



3' 
CCACAGA           ATTCAGGATTTCATAAGGA          ATTATGAAAAGATGCATCTAAGATATAAATTTGATCGGTTTAACTTTTACGTTCTTAACACTGAACCGTTAACTTTAAAAATTATAGGTCCAACATATATAATACTACTAGTTTTAAATTTTAATATACACATTTGATTTAAGTATATAAAAATTATACCGTGCTAATTTTTTTTAGGAATTTTCAATGTTACACATTTGAAAATTTTGAAAGATTAAAGCAAAAAAATAAAAGAAAAACT
       TGCAGAGGCGT                   TGGGTGCATT                                                                                                                                                                                                                                                 
       |||||||||||                   ||||||||||                                                                                                                                                                                                                                                 G
       ACGTCTCCGCA                   TAGATCTCCC                                                                                                                                                                                                                                                 
 GTAAAC           -------------------          CCAAGGCACCCAAGTGCACTTGGGTACGAGGGGAGAGATCTAATATATATCATCACAATATAAAAAAATTTTTATAAATTTATATCTCCACACTTGGGTGCAATTTTCATTGTATATTATTATGTTACTTCTAACTTACGTGGAGAAATTCGTGTATATATTTAAATTTAGAATATAGATAGAATAAAAACAATGATTGTGGGGAGGTTCACCAATAGCCATCGTGAAAACCGCAAAGTTA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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