SE3820264

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_8582
  • Solanum tuberosum
  • SE3820264
  • Mutator
  • M6
  • chr09:49610243-49610589
  • TTATAATTT
  • TTATAATTTGGGATAAGGGTCTGAAAAATACTTCAACTTTGGTCGGATTTGCTGTTGCGATACTAAACTTTCATGAGGACCTATTACCTCCCTAGACTATTTAATACC

Secondary structure and sequence

TSD    TIR
5'



3' 
         TTT       G                                                                                              TTTTTTACCCCCTGAACTATTTAATAGTGTATTTTAAAGGTATATATGTGCCCACGTGGACA
   TTATAA   GGGATAA GGTCTGAAAAATACTTCAACTTTGGTCGGATTTGCTGTTGCGATACTAAACTTTCATGAGGACCTATTACCTCCCTAGACTATTTAATACCGTA                                                              
   ||||||   ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||                                                              C
   AATATT   CCCTATT CCAGACTTTTTATGGGGTTGAAACCAGCCTAAACGACAACGCTATGATTTGAAAGTACTCCTGGATAATGGAGGGATCTGATAAATTATGGCAT                                                              
TTT      ---       A                                                                                              AAAATTTGTATATATAAACGGGTGCACCTGTATTTTTTATTACGTTTTAATCTTTATCATCA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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