SE3830266

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_8584
  • Solanum tuberosum
  • SE3830266
  • hAT
  • Hat22
  • chr09:13649082-13649590
  • TATAGGAC
  • CAGTGTTTTAAAAGGCG

Secondary structure and sequence

TSD    TIR
5'



3' 
TATAGGAC         A       ----    CGTGAGACAAGTCATTTTATACAGTACAGGGCGAGGCATAATCCCCGAGACACGAGGCGTAAGTCCAATGGATCTACGGGGGTAGTCTCATGTATATTCAATTTTATAATTTTATTACAAATAAAATAAGCAAAAGTAAACCTTTCAATTATTTATGATTTTTATTTGAGATAAGTATTAATAATCAATAATGAAGAAAAAAAGTATTATAATTACTATTTGA
        CAGTGTTTT AAAGGCG    GGGG                                                                                                                                                                                                                               
        ||||||||| |||||||    ||||                                                                                                                                                                                                                               G
        GTCACAAAA TTTTTGC    ACCC                                                                                                                                                                                                                               
CAGGATAT         A       AAAA    CGCTCAGGGTCCCATTCAGAGCCCCGCCCCGCATGGTTTTTGCGAGACCCCGCATTAATTTCTGCATCTAGGTATTCCGTATTCAGGATTTTAAACTCCGCATTCGGGGTTCGTATTTTTGCATTCAGGACCCGCATTTTTGCATACGGGTACGTAAAAATTATATAAAAAATCTTGAAAAAAACGAAATTTATTATAAAAATAATAACCACATTACTATAAA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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