Plant MITE

SE3810268

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_8586
Solanum tuberosum
SE3810268
Tc1/Mariner
St5
chr05:1741518-1741769
TA
TACTCCCTCCGTTTTAAAAAGAATGATCTAGT

Secondary structure and sequence

TSD TIR

5'

3'

         C                      --------C      GAA         AAGAAAATAAAGAAGATTTTTAATCTTGTGATTCTAAATTAAAGTTATATCAAATGTACCAAAACATCTTT
TACTCCCTC GTTTTAAAAAGAATGATCTAGT         TGATTT   ACGGAGTTT                                                                       
||||||||| ||||||||||||||||||||||         ||||||   |||||||||                                                                        
ATGAGGGAG CAAAGTTTTTTTTATTGGATTA         TCACAC   TTTTTTCTT                                                                       
         A                      AAAGAAAAA      AAA         ATTGGGTAAAGGAAAAAACCGTTGTGAAATTAAAATTGAAAGGTGCACTGTACAAATTCCGGTATTCTAAT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3810268

TACTCCCTCCGTTTTAAAAAGAATGATCTAGTCTGATTTGAAACGGAGTTTAAGAAAATAAAGAAGATTTTTAATCTTGTGATTCTAAATTAAAGTTATATCAAATGTACCAAAACATCTTTTAATCTTATGGCCTTAAACATGTCACGTGGAAAGTTAAAATTAAAGTGTTGCCAAAAAAGGAAATGGGTTATTCTTTTTTAAACACACTAAAAAGAAAATTAGGTTATTTTTTTTGAAACAGAGGGAGTA

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