SE3820269

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_8587
  • Solanum tuberosum
  • SE3820269
  • Mutator
  • M11
  • chr01:20240773-20241097
  • ATAAAATAA
  • GGGA

Secondary structure and sequence

TSD    TIR
5'



3' 
ATAAAATAA    TAAG C       C CC                                 C        A                  C    C                     A        - T    C      CAC   --      -      AATT
         GGGA    G ATAAGTA C  CCTAGACTATGACCGAAATCTCAGAGACACACC TAACTAAA TAAGGTCCTATTACCCCC TGAA TTATTTTTTTTGTAATTTTGT CACCTTTT G CTTA GTGGCA   TCC  GTGTCT CCACGC    
         ||||    | ||||||| |  ||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||| |||| ||||||||||||||||||||| |||||||| | |||| ||||||   |||  |||||| ||||||    G
         CCCT    C TGTTCAT G  GGATTTGATACTGGCTTTAGGGTTTCTGTGTGG ATTGATTT ATTCCAGGATAATGGGGG ACTT GGTAAAAAAAACATTAAAACA GTGGAAAA C GAAT CACCGT   AGG  TATAGA GGTGCG    
AATAAAATA    TTTA A       T TA                                 A        G                  -    T                     C        A C    A      ---   TT      A      CGGA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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