SE3830270

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_8588
  • Solanum tuberosum
  • SE3830270
  • hAT
  • Hat19
  • chr11:7931191-7931327
  • TCTTGATT
  • TCTTGATT

Secondary structure and sequence

TSD    TIR
5'



3'
    TT    CTTA     GC          CTTTT    - C  --ACC     C      T      ATAC
  TC  GATT    GTTGT  GGACTCTTCA     GATG C GC     CGTGT GGATTC CCAAAA    
  ||  ||||    |||||  ||||||||||     |||| | ||     ||||| |||||| ||||||    A
  AG  CTGA    CAACG  CCTGAGAAGT     TTAC G TG     GTACA CCTAAG GGTTTT    
TT  TT    --TA     AA          ---TT    A T  CCCAC     A      C      CATC

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End