SE3820272

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_8590
  • Solanum tuberosum
  • SE3820272
  • Mutator
  • M8
  • PGSC0003DMB000000668:154530-154856
  • TAAAAGAAA
  • AGGCATAATATATAAACATGATCATTAACTTGGTGTCATTTGACAACTATGACCTTTAACTTTGAGAGTGCACAAGTAGACACTTAAACTTGTATAAAATTGAACAAGTAGACACATTCGTCCTACATGGCACCCTACAT

Secondary structure and sequence

TSD    TIR
5'



3' 
 TAAAAGAA                       A    C     G   TTT          A              A                                    A          C  TC             CCC     -GACAATT      C
         AGGCATAATATATAAACATGATC TTAA TTGGT TCA   GACAACTATG CCTTTAACTTTGAG GTGCACAAGTAGACACTTAAACTTGTATAAAATTGA CAAGTAGACA AT  GTCCTACATGGCA   TACAT        TTGTGT 
         ||||||||||||||||||||||| |||| ||||| |||   |||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||| ||  |||||||||||||   |||||        |||||| C
         TCTGTATTATGTATTTGTACTGG AATT AACCG AGT   CTGTTGATAC GGAGGTTGAAACTT CACGTGTTTATCTGTGAATTTGAACATATTTTAACT GTTCATCTGT TG  CAGGATGTACCGT   ATGTG        AGTACA 
AAAAGAAAA                       G    A     A   TAC          G              A                                    C          C  TA             ATT     TATCCGGC      T
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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