SE3820273

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_8591
  • Solanum tuberosum
  • SE3820273
  • Mutator
  • M11
  • chr02:33910863-33911187
  • CAAAATTTA
  • AAATTTAGGGATAAGGCACAAGTAGCCCCCAGACTATGACCGAAATTTCACACACACCTTAACTAAACTAAGGTCCTATTACCCCCTGAACTTATTTTTTTTGTAATTTTGTACACCATTTGTCTTACGTGGCACACTCCGTGACTCCACACA

Secondary structure and sequence

TSD    TIR
5'



3'
CA      -A    T    CAC     G     -                    --C                                -                  ---           A    -A    T           CAC    --TGA   -   A  ATT
  AAATTT  GGGA AAGG   AAGTA CCCCC AGACTATGACCGAAATTTCA   ACACACCTTAACTAAACTAAGGTCCTATTACC CCCTGAACTTATTTTTTT   TGTAATTTTGT CACC  TTTG CTTACGTGGCA   TCCG     CTC CAC CA   
  ||||||  |||| ||||   ||||| ||||| ||||||||||||||||||||   |||||||||||||||||||||||||||||||| ||||||||||||||||||   ||||||||||| ||||  |||| |||||||||||   ||||     ||| ||| ||   G
  TTTAAA  CCCT TTCC   TTCAT GGGGG TCTGATACTGGTTTTAGGGT   TGTGTGGAATTGATTTGATTCCAGGATAATGG GGGACTTGGGTAAAAAAA   ACATTAAAACA GTGG  AAAC GAATGCACCGT   AGGT     GAG GTG GT   
 A      AC    T    ATC     G     A                    CTC                                A                  AAA           C    AA    C           ---    TTATA   A   C  GAA

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End