Plant MITE

SE3810274

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_8592
Solanum tuberosum
SE3810274
Tc1/Mariner
St4
chr09:40059770-40060031
TA
TACTCCCTCCGTCTACAATTAATTGTCATG

Secondary structure and sequence

TSD TIR

5'

3'

         C      AA   A        GTTTC      T        ACAATAAGAAC      CA     TTACGATGTATATTTTCATCATATTGATATGCAAAAAATTGCAACTTATAGTACTTTTCGTAT
TACTCCCTC GTCTAC  TTA TTGTCATG     CTTTTT AGAGTCAA           TTTGAC  ACATT                                                               
||||||||| ||||||  ||| ||||||||     |||||| ||||||||           ||||||  |||||                                                               A
ATGAGGGAG CAGGTG  AAT AACAGTAC     GAAAAG TTTCAGTT           AAACTG  ATTAA                                                               
         A      AA   A        AACGC      C        -----------      --     AATTTCAATTTAATCTAATGCAATTAAGCTATAAAAAAAATTTTTTTAATCTATAAGTTTTTG

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3810274

TACTCCCTCCGTCTACAATTAATTGTCATGGTTTCCTTTTTTAGAGTCAAACAATAAGAACTTTGACCAACATTTTACGATGTATATTTTCATCATATTGATATGCAAAAAATTGCAACTTATAGTACTTTTCGTATAGTTTTTGAATATCTAATTTTTTTAAAAAAAATATCGAATTAACGTAATCTAATTTAACTTTAAAATTAGTCAAATTGACTTTCGAAAAGCGCAACATGACAAATAAAAGTGGACAGAGGGAGTA

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