Plant MITE

SE3810276

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_8594
Solanum tuberosum
SE3810276
Tc1/Mariner
St19
chr07:42438076-42438357
TA
TACTCCCTCAATTCCATATTAACTGAATTTTTTAGGT

Secondary structure and sequence

TSD TIR

5'

3'

         A   C      A         TTT    TTTTTT   -    -C        -   - TTGTTCAAGATAGATGTTTGAAATATTTTTAATATTTGTCCTTTCATTTATTGAAATTTTATATTTTCTAGGAGAT
TACTCCCTC ATT CATATT ACTGAATTT   AGGT      CAT TGTT  AAAATAAT TGA A                                                                            
||||||||| ||| |||||| |||||||||   ||||      ||| ||||  |||||||| ||| |                                                                             
ATGAGGGAG TAA GTATAA TGACTTAAA   TCCG      GTA ATAA  TTTTATTG AAG T                                                                            
         A   A      G         CAC    TTACAT   T    AT        T   T CCTGTATTAAATTTGGTATTAAAGGTGATAACGGGAAACACTTTAGTATTTATATTGAAATATTCATCACATTAAA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3810276

TACTCCCTCAATTCCATATTAACTGAATTTTTTAGGTTTTTTTCATTGTTCAAAATAATTGAATTGTTCAAGATAGATGTTTGAAATATTTTTAATATTTGTCCTTTCATTTATTGAAATTTTATATTTTCTAGGAGATAAATTACACTACTTATAAAGTTATATTTATGATTTCACAAAGGGCAATAGTGGAAATTATGGTTTAAATTATGTCCTTGAATGTTATTTTTAAATATATGTACATTGCCTCACAAATTCAGTGAATATGAAATAGAGGGAGTA

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