Plant MITE

SE3810278

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_8596
Solanum tuberosum
SE3810278
Tc1/Mariner
St3
chr12:2317411-2317666
TA
TACTTCCTCTGTACAACAATATTTGTCCAT

Secondary structure and sequence

TSD TIR

5'

3'

            A  A AA           -     A  --   CACAGAAATTAAGAAGCAGTAAATGATAGGGGTAATTTTTCCAAAGCACCTTTATTAAATATAAGTCATTTAAACATTGAAAAATG
TACTTCCTCTGT CA C  TATTTGTCCAT TATTG CT  TGA                                                                                      
|||||||||||| || |  ||||||||||| ||||| ||  |||                                                                                       
ATGAGGGAGGCA GT G  ATGAACAGGTA TATGA TA  ACC                                                                                      
            A  A AA           A     -  AA   TTACAGGTTGTTATAATCAGGTCAAATATTTAGCTATTTATTAAATAGTAAAATACAGATGAAATGGGAACGATAATTTATGATAA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3810278

TACTTCCTCTGTACAACAATATTTGTCCATTATTGACTTGACACAGAAATTAAGAAGCAGTAAATGATAGGGGTAATTTTTCCAAAGCACCTTTATTAAATATAAGTCATTTAAACATTGAAAAATGAATAGTATTTAATAGCAAGGGTAAAGTAGACATAAAATGATAAATTATTTATCGATTTATAAACTGGACTAATATTGTTGGACATTCCAAAATAGTATAATGGACAAGTAAAGATGAACGGAGGGAGTA

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