SE3820281

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_8599
  • Solanum tuberosum
  • SE3820281
  • Mutator
  • M3
  • chr07:7495543-7495904
  • TTCTCTAAA
  • AAGGGAAAAAGGACAAATATACCCCCGAACTATCGTAAATGGTATGCAGATATCCTCCATCATACTTTTGGGATATTGGTGCCCCTGCCGTCCAAAAACTAGAGCATATATGCCCTT

Secondary structure and sequence

TSD    TIR
5'



3' 
TTCTCTA            AC           C       C              G         A                                                          CACT     AGAAGATTAAATA   ACACGTGGCCCAATCTTATTCGTCGATCCGATATTTAA
       AAGGGAAAAAGG  AAATATACCCC GAACTAT GTAAATGGTATGCA ATATCCTCC TCATACTTTTGGGATATTGGTGCCCCTGCCGTCCAAAAACTAGAGCATATATGCCCTT    CTAAC             GGG                                      
       ||||||||||||  ||||||||||| ||||||| |||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    |||||             |||                                      T
       TTCCCTTTTTCC  TTTATATGGGG CTTGATA CATTTACCATACGT TATAGGAGG AGTATGAAAACCCTGTAACCACGGGGACGGCAGGTTTTTGATCTTGTATATATGGGAA    GATTG             CTG                                      
AAATCTC            CT           -       A              A         C                                                          ATAT     ------------C   TATGTTCACAGTATTAGAATAGGTGGCTGGGTTATAAA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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