SE3820284

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_8602
  • Solanum tuberosum
  • SE3820284
  • Mutator
  • M8
  • chr04:23677727-23678051
  • TTCAACAAA
  • AAGGCATAATACATAAATATGCCCTTTAACTTGGCCTCATTTCACATTTATACCCTCCAACTTTGAGTGTGCACAAATAGGCACTTAAACTTGTATAAAGTTGAACAAGTAGACACATGAGTCTTATGTGGCATAATACACATAGGACACC

Secondary structure and sequence

TSD    TIR
5'



3' 
TTCAACA                       C        G         C        A                     C  A                     A          T         A         G    AA    -CA   --GA  -  AC
       AAGGCATAATACATAAATATGCC TTTAACTT GCCTCATTT ACATTTAT CCCTCCAACTTTGAGTGTGCA AA TAGGCACTTAAACTTGTATAA GTTGAACAAG AGACACATG GTCTTATGT GCAT  TACA   TAG    CA CC  
       ||||||||||||||||||||||| |||||||| ||||||||| |||||||| ||||||||||||||||||||| || ||||||||||||||||||||| |||||||||| ||||||||| ||||||||| ||||  ||||   |||    || ||  G
       TTCCGTATTATGTATTTATACGG AAATTGAA TGGAGTAAA TGTAAATA GGGAGGTTGAAACTCATACGT TT ATCTGTGAGTTTGAACATATT TAACTTGTTT TCTGTGTGC CAGAATACA CGTA  ATGT   ATT    GT GG  
AAACAAC                       A        A         A        C                     A  C                     C          T         A         A    GG    ACC   AAAC  A  AT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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