SE3830287

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_8605
  • Solanum tuberosum
  • SE3830287
  • hAT
  • Hat24
  • chr04:46565661-46566314
  • CCTTTTCC
  • TAGGGGTGTGCA

Secondary structure and sequence

TSD    TIR
5'



3' 
CCTTTTCC            AAAACCGAA    AAAAAATGTTATTGGGTTATTAAGCTAACGGGTTTTTAATGGTTTTATAAAAAATTTTATTGGGTTATTGGTTTGGTATCGGTTTTTAGTATTGAGTTATTGGGTAAACCGATAACCCATTATAAGACGATAGTAAGTTACTACTATACCCTTCATAAATATTCAATATTAATAATTTAACATAACTAGACACTATATCAGTACTCTACACTACAGTCTACACACTTCACACGTCATAGTACTTCTACTTCACCTCAAAAATTCCATAGTATGTTTTGGTTGTAACATGTTATTG
        TAGGGGTGTGCA         CCGA                                                                                                                                                                                                                                                                                                       
        ||||||||||||         ||||                                                                                                                                                                                                                                                                                                       T
        ATCCCCACACGT         CCAA                                                                                                                                                                                                                                                                                                       
CCTTTTCC            ---AGCCAG    GCCAAATCAAAATACATAATAGCCAAGCCAAATAACCAAAAGCCACAAATTTATACGATTTAGTTATTCTATAAAAAATAACCAAAAGCTAAATAGCTAAAAACCAGTAATTACTAAGCTAAAAGCCAAATGGGTTATTCTTTTACGAGTACTTTAGTTATATACTAAAGAGTGAGGAGATTGTTAAACCATACTATGTTACTCTGTTCGTTTAGTCAACATTTACGAAACTATATCACTTTGTTCTTTAGATTACTCTTTAACGTAGTTATTCTCATCTACATCATACTTCCGA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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