Plant MITE

SE3830288

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_8606
Solanum tuberosum
SE3830288
hAT
Hat3
chr08:29071248-29071451
CCCCCACC
CAGTGGCGGAGCCA

Secondary structure and sequence

TSD TIR

5'

3'

CCCCCACC              GGATTTT    A      T   AAA    AAAATATAGACACACGAAGTAGCCGAAGGGGGGTCGACATCTACTATATATAC
        CAGTGGCGGAGCCA       CAGT AGGGGG TCA   TCTA                                                     
        ||||||||||||||       |||| |||||| |||   ||||                                                     C
        GTCACCGCCTCGGT       GTTA TCCCCC AGT   AGGC                                                     
CCACCCCC              --GGAAT    C      C   ---    TGGGGGAAGCCGCCTTTTAATATACTAAATACGTACCAATTTTATTAAAAAAT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3830288

CCCCCACCCAGTGGCGGAGCCAGGATTTTCAGTAAGGGGGTTCAAAATCTAAAAATATAGACACACGAAGTAGCCGAAGGGGGGTCGACATCTACTATATATACCTAAAAAATTATTTTAACCATGCATAAATCATATAATTTTCCGCCGAAGGGGGTCGGATGACCCCCCTCATTGTAAGGTGGCTCCGCCACTGCCCCCACC

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