SE3820289

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_8607
  • Solanum tuberosum
  • SE3820289
  • Mutator
  • M8
  • chr12:60839287-60839608
  • TAATAATAA
  • AGGCATAATACATAAATATGTCATTTAACTTGGCCTCATTTCATATTTATGCCCTTCAACTTTGGGTATGCACAAGTAGACACTTAAACTTGTATAAACTTGAACAAGTAGACAC

Secondary structure and sequence

TSD    TIR
5'



3' 
TAATAATA                      A           C   TT C      A    C             A                              C                TTGA             CAA    -  ----AGGACA  AC
        AGGCATAATACATAAATATGTC TTTAACTTGGC TCA  T ATATTT TGCC TTCAACTTTGGGT TGCACAAGTAGACACTTAAACTTGTATAAA TTGAACAAGTAGACAC    GTCCTACGTGGCA   TACA GT          CC  
        |||||||||||||||||||||| ||||||||||| |||  | |||||| |||| ||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||    |||||||||||||   |||| ||          ||  G
        TCCGTATTATGTATTTATACAG AAATTGAACCG AGT  A TGTAAA ACGG AAGTTGAAACCCA ACGTGTTCATCTGTGAATTTGAACATATTT AACTTGTTTATCTGTG    CAGGATGTACCGT   ATGT CA          GG  
AATAATAA                      G           A   TT A      C    A             C                              T                --TG             AGG    A  GTAAAAAACA  AT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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