Plant MITE

SE3820292

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_8610
Solanum tuberosum
SE3820292
Mutator
M8
PGSC0003DMB000001032:4229-4554
TTTCATAAA
AAAGGCATAATACATATATTTGACCTTAAACTTGGCTTCAAATTTTAACTTTTGACCTCCAACTTTCATAGTGCACAAATAGACACTTAAACTTGTATAAAGTAGAACAAGTAAACACACGAGTCCTACATGGCACAATAC

Secondary structure and sequence

TSD TIR

5'

3'

TTTCAT     C               G                              T                                                  A         A       A T           CAA   --    AGGACACCACG
      AAAGG ATAATACATATATTT ACCTTAAACTTGGCTTCAAATTTTAACTTT GACCTCCAACTTTCATAGTGCACAAATAGACACTTAAACTTGTATAAAGT GAACAAGTA ACACACG G CCTACATGGCA   TAC  ACGT           
      ||||| ||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||| | |||||||||||   |||  ||||           T
      TTTCC TATTATGTATATAAA TGGAATTTGAACCGAAGTTTAAAATTGAAA CTGGAGGTTGAAAGTATCACGTGTTTATCTGTGAATTTGAACATATTTCA CTTGTTTAT TGTGTGT C GGATGTACCGT   ATG  CCGT           
AAATAC     C               A                              -                                                  A         C       A T           AGG   TA    AAAAAACAGGA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3820292

TTTCATAAAGGCATAATACATATATTTGACCTTAAACTTGGCTTCAAATTTTAACTTTTGACCTCCAACTTTCATAGTGCACAAATAGACACTTAAACTTGTATAAAGTAGAACAAGTAAACACACGAGTCCTACATGGCACAATACACGTAGGACACCACGTAGGACAAAAAATGCCATGTAGGATGCCATGTAGGTCATGTGTGTCTATTTGTTCAACTTTATACAAGTTTAAGTGTCTATTTGTGCACTATGAAAGTTGGAGGTCAAAGTTAAAATTTGAAGCCAAGTTTAAGGTAAAATATATGTATTATCCCTTTCATAAA

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