Plant MITE

SE3820297

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_8615
Solanum tuberosum
SE3820297
Mutator
M3
:0-0
TTAAAAATA
AGGGAAAAAGGACAAATATATCCCCAAACTATCATAAATGGTATACAAATACCCTCCGTCATACTTTTGGGACATTGATGCCCATGCCGTCAAAAAACTAGAACATATATACTCTTTATACTAATAGACATACACGTGTCACAATCTTATCCATCGAT

Secondary structure and sequence

TSD TIR

5'

3'

    TTAAAAAT        A             C  A       A          A  A    C                        A    CA       A          A       A        A    ---T    -------AT       T             A     CCGA
            AGGGAAAA GGACAAATATATC CC AACTATC TAAATGGTAT CA ATAC CTCCGTCATACTTTTGGGACATTG TGCC  TGCCGTC AAAAACTAGA CATATAT CTCTTTAT CTAA    AGAC         ACACGTG CACAATCTTATCC TCGAT    
            |||||||| ||||||||||||| || ||||||| |||||||||| || |||| |||||||||||||||||||||||| ||||  ||||||| |||||||||| ||||||| |||||||| ||||    ||||         ||||||| ||||||||||||| |||||    C
            TCCCTTTT CCTGTTTATATGG GG TTGATAG ATTTACCATA GT TATG GAGGCAGTATGAAAACCCTGTAAC ACGG  ACGGCAG TTTTTGATCT GTATATA GGGAAGTG GATT    TCTG         TGTGCAC GTGTTAGAATAGG AGCTA    
CAAAATAAAAAT        -             A  C       C          C  C    A                        C    AG       G          C       C        A    CCCT    ATTTATCCC       C             C     TTTA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3820297

TTAAAAATAGGGAAAAAGGACAAATATATCCCCAAACTATCATAAATGGTATACAAATACCCTCCGTCATACTTTTGGGACATTGATGCCCATGCCGTCAAAAAACTAGAACATATATACTCTTTATACTAATAGACATACACGTGTCACAATCTTATCCATCGATCCGACATTTATCGACGGATAAGATTGTGCCACGTGTCCCTATTTAGTCTTCCCTTAGAGTGAAGGGCATATATGCTCTAGTTTTTGGACGGCAGAGGCACCAATGTCCCAAAAGTATGACGGAGAGTATCTGCATACCATTTACGATAGTTCGGAGGTATATTTGTCCTTTTCCCTTAAAAATAAAAC

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