SE3820298

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_8616
  • Solanum tuberosum
  • SE3820298
  • Mutator
  • M8
  • chr03:18196589-18196914
  • TATTAATTA
  • ATTAATTAGGCATAATACATAAACATGACCCTTAACTTGTCTTCAACGGACAACTATG

Secondary structure and sequence

TSD    TIR
5'



3' 
 T      T                                TCT     G          CCCTCC       A  A           A                     A              CAT          A   AA      --------TA GA GCCA
  ATTAAT AGGCATAATACATAAACATGACCCTTAACTTG   TCAAC GACAACTATG      AACTTTG GT TGCACAAGTAG CACTTAAACTTGTATAAAATT AACAAGTAGACACA   GTCTTACATG CAT  TACATG          G  C    
  |||||| ||||||||||||||||||||||||||||||||   ||||| ||||||||||      ||||||| || ||||||||||| ||||||||||||||||||||| ||||||||||||||   |||||||||| |||  ||||||          |  |     
  TAATTA TCCGTATTATGTATTTGTACTGGGAATTGAAC   AGTTG CTGTTGATAC      TTGAAAC CA ACGTGTTCATC GTGAATTTGAACATATTTTAA TTGTTTATCTGTGT   TAGGATGTAC GTG  ATGTAC          C  G    
AT      -                                CAC     A          TGAAAA       C  C           C                     C              AAG          C   GG      TTTAAAAATA AG ATGC
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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