SE3820300

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_8618
  • Solanum tuberosum
  • SE3820300
  • Mutator
  • M8
  • chr12:66405347-66405664
  • TATATAGAA
  • TATAGAAGGCATGATACATAAACATGATCCTTAACTTGGCGTCAGCTGACAACTATGACTTTTAACTTTGGGTGTGCACACTTAAACTTGTATAAAATTGAACAAATAGACACATTCGTCCTACATGACACCCTACATG

Secondary structure and sequence

TSD    TIR
5'



3'
 TA    GA                                 CG     T  C  C    A      A               --------                      C  A         T    C         CCC      AAAAATT    --T  TA
   TATA  AGGCATGATACATAAACATGATCCTTAACTTGG  TCAGC GA AA TATG CTTTTA CTTTGGGTGTGCACA        CTTAAACTTGTATAAAATTGAA AA TAGACACAT CGTC TACATGACA   TACATG       TGTG   CC  
   ||||  |||||||||||||||||||||||||||||||||  ||||| || || |||| |||||| |||||||||||||||        |||||||||||||||||||||| || ||||||||| |||| |||||||||   ||||||       ||||   ||  C
   ATAT  TCCGTATTATGTATTTGTACTGGGAATTGAACC  AGTTG CT TT ATAC GGAGGT GAAACTCACACGTGT        GAATTTGAACATATTTTAACTT TT ATCTGTGTA GCAG ATGTACTGT   ATGTAC       ATAC   GG  
AAG    -A                                 TA     C  A  A    A      A               TCATCTGG                      A  C         C    T         ATT      -------    TGC  TG

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End