Plant MITE

SE3830304

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_8622
Solanum tuberosum
SE3830304
hAT
Hat8
chr10:41584337-41584731
GAGTGCGC
GTGCGCCAGTGTTATCAAGGCGAAAAGCGC

Secondary structure and sequence

TSD TIR

5'

3'

GA    G             -    ----AA      AAAA      --        GTGGGGGCTTTAAGCGCAAAGCGCAAATATAGCGTGGGCTTTGATGAAAAAAGGCGCAAATGGAGAAAAATACAAATATATATGTTTAGTCCAAGACTAATAATTAAGAACATGAATGACAAATATATGACCAAAGAAAATGAA
  GTGC CCAGTGTTATCAA GGCG      AAGCGC    AAGCTC  TAAGGTCC                                                                                                                                                
  |||| ||||||||||||| ||||      ||||||    ||||||  ||||||||                                                                                                                                                 
  CGTG GGTCACAATAGTT CCGT      TTCGCG    TTCGGG  TTCGCTCC                                                                                                                                                
CG    A             T    GCGAAA      CGAA      AC        GAGTTTTGCACAACTCGCGAAGCGGAGCGAAATACACGCGAAGTCACAGCAGTAGTTCCAAAATTCCGTTTAAAAAGGAACGGTTACTCGGAGAATACTTCTTCACTGTGATTTGTTAACTATAAAGTGAAATAGTATTTTTTT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3830304

GAGTGCGCCAGTGTTATCAAGGCGAAAAGCGCAAAAAAGCTCTAAGGTCCGTGGGGGCTTTAAGCGCAAAGCGCAAATATAGCGTGGGCTTTGATGAAAAAAGGCGCAAATGGAGAAAAATACAAATATATATGTTTAGTCCAAGACTAATAATTAAGAACATGAATGACAAATATATGACCAAAGAAAATGAATTTTTTTATGATAAAGTGAAATATCAATTGTTTAGTGTCACTTCTTCATAAGAGGCTCATTGGCAAGGAAAAATTTGCCTTAAAACCTTGATGACGACACTGAAGCGCACATAAAGCGAGGCGAAGCGCTCAACACGTTTTGAGCCTCGCTTCAGGGCTTAAGCGCGCTTAAAGCGTGCCTTTGATAACACTGGAGTGCGC

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