SE3820305

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_8623
  • Solanum tuberosum
  • SE3820305
  • Mutator
  • M11
  • chr12:27408956-27409281
  • TATTCTCTA
  • TAGGGAAAAGGTACAAGTACCCCCCTAGACTATGACTGAAATCTCAAAGACACACCTTAACTAAACTAAGGTCCTATTACCCTCCAGAACCCATTGTTTTTGTAATTTTGTGCACTTTTTTGGCTTACGTGGCATCC

Secondary structure and sequence

TSD    TIR
5'



3' 
TATTCTC      A    T                                  A        C          T            -      A    CC   G                        T G         --  -   TAATAT    C     CCT
       TAGGGA AAGG ACAAGTACCCCCCTAGACTATGACTGAAATCTCA AGACACAC TTAACTAAAC AAGGTCCTATTA CCCTCC GAAC  ATT TTTTTGTAATTTTGTGCACTTTTT G CTTACGTGG  CA TCC      CTCC ACGCG   
       |||||| |||| |||||||||||||||||||||||||||||||||| |||||||| |||||||||| |||||||||||| |||||| ||||  ||| |||||||||||||||||||||||| | |||||||||  || |||      |||| |||||   C
       ATCCCT TTCC TGTTCATGGGGGGATCTGATACTGGCTTTAGGGT TCTGTGTG AATTGATTTG TTCCAGGATAAT GGGAGG CTTG  TAA AAAAACATTAAAATATGTGGAAAA C GAATGCACC  GT AGG      GAGG TGCGT   
ATCTCTT      A    T                                  C        A          T            C      A    AA   -                        - A         AT  G   --CACT    -     TAA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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