SE3820306

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_8624
  • Solanum tuberosum
  • SE3820306
  • Mutator
  • M6
  • chr03:4086904-4087125
  • TTGTTTTTA
  • AGGGATAAGGGTTTGAAAAATACCCCAACTTTGGTCGGATTTGCTGTTGCGATACTAAACTTTCACGAGGACCTATTACCTCCCTAGACTATTTAATAC

Secondary structure and sequence

TSD    TIR
5'



3' 
TTGTTTTT                                                                 C                                 CGTA
        AGGGATAAGGGTTTGAAAAATACCCCAACTTTGGTCGGATTTGCTGTTGCGATACTAAACTTTCA GAGGACCTATTACCTCCCTAGACTATTTAATAC    
        ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||     
        TCCCTATTCCCAAACTTTTTATGGGGTTGAAACCAGCCTAAACGACAACGCTATGATTTGAAAGT TTCCTGGATAATGGAGGGATCTGATAAATTATG    
ATTTTTGT                                                                 A                                 TTTT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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