SE3810311

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_8629
  • Solanum tuberosum
  • SE3810311
  • Tc1/Mariner
  • St15
  • chr08:30816060-30816303
  • TA
  • TCTTCCGTCCAACAATAGTAATTCA

Secondary structure and sequence

TSD    TIR
5'



3'
TACT    -CC      C      AA    -----------          TCTAATTTAG     CA -  G   --- TTTACCTTTTGTGTCTATTTTACCTTGCTATTAAATATTATTTATCATCTAACAT
    TCTT   GTCCAA AATAGT  TTCA           ATAATATTTG          AAAAT  A GA ATA   A                                                       
    ||||   |||||| ||||||  ||||           ||||||||||          |||||  | || |||   |                                                       A
    AGAA   CAGGTT TTATTA  AAGT           TGTATGGGGA          TTTTG  T AT TTA   T                                                       
 ATC    AAA      A      AC    GATAACTGAAC          -------ATT     -- T  -   TTA CCTCATTATAATGATATAATAGGAAACCTAAATAATTTAAATTACGAAACTTTTT

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End