SE3820312

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_8630
  • Solanum tuberosum
  • SE3820312
  • Mutator
  • M8
  • chr11:5386886-5387154
  • TTAGGCATA
  • TAGGCATAATACATAAACATGA

Secondary structure and sequence

TSD    TIR
5'



3' 
T           C          -----  C  CTATGCCCTCCAACTTTGAGTATGCACAAGTAGACACTTAAACTTGCATAAAATTGAATAAGTAGACACACGTGTCTTACATGACATAATACATGTAGGATGCA
 TAGGCATAATA ATAAACATGA     GA AA                                                                                                        
 ||||||||||| ||||||||||     || ||                                                                                                        A
 ATCCGTATTAT TATTTGTACT     TT GA                                                                                                        
A           A          GGGAA  -  ATTGAAGTCGACTATTGATACTGGAAATTGAAACCACACGTGTTTATTTGTGAATTTGAACATATTTTAACTTGCTTATCTGTGTAAACAGGATGTACTGTTAA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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