Plant MITE

SE3810313

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_8631
Solanum tuberosum
SE3810313
Tc1/Mariner
St16
PGSC0003DMB000000968:15457-15749
TA
TACTCCATCCGTCCCATTTTATGTGGCA

Secondary structure and sequence

TSD TIR

5'

3'

      A                     --C    TC --     -----  TCAGTCCCAAAAAGAATGTCTCATTTCCTTATATGATAAGTATTTAAAAGTACAATTCCTCTTTTACCCTTGTTGGTCCCATTTAATCAAAGATAGTATT
TACTCC TCCGTCCCATTTTATGTGGCA   CATT  C  TTTTT     GG                                                                                                    
|||||| |||||||||||||||||||||   ||||  |  |||||     ||                                                                                                     
ATGAGG AGGCAGGGTAAAATACACCGT   AAAC  T  CCCGT     AA                                                                                                    
      G                     TAT    -- AG     ACTTC  ATTCTTTATTTATTTCTGAAACTTTACAAATGGTTTAACGGGGAAGTTTTTTGTCAGTATAATTTTTCATCTGAGAAGAGAGAGGAGTATTTACGTAACC

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3810313

TACTCCATCCGTCCCATTTTATGTGGCACCATTTCCTTTTTGGTCAGTCCCAAAAAGAATGTCTCATTTCCTTATATGATAAGTATTTAAAAGTACAATTCCTCTTTTACCCTTGTTGGTCCCATTTAATCAAAGATAGTATTCCAATGCATTTATGAGGAGAGAGAAGAGTCTACTTTTTAATATGACTGTTTTTTGAAGGGGCAATTTGGTAAACATTTCAAAGTCTTTATTTATTTCTTAAACTTCATGCCCGATCAAATATTGCCACATAAAATGGGACGGAGGGAGTA

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