Plant MITE

SE3810314

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_8632
Solanum tuberosum
SE3810314
Tc1/Mariner
St1
chr09:8414400-8414676
TA
TACTCCCTCTGTCCCTAATTACTTGTCCACTTTTGAATTGG

Secondary structure and sequence

TSD TIR

5'

3'

                              -    --GAA    CAC        AGAAAACAATAA    T   GTGAGTTTACCATTTTGCCGCTATTAATTATGAAGTGGATGAATTAAAAACTTAATATTTTCAAGAAGCTC
TACTCCCTCTGTCCCTAATTACTTGTCCAC TTTT     TTGG   ACCTATTA            TTGA ATA                                                                       
|||||||||||||||||||||||||||||| ||||     ||||   ||||||||            |||| |||                                                                        
ATGAGGGAGGCAGGGATTAATGAACAGGTG AAAG     AATC   AACAGGGA            TGAA CAG                                                                       
                              T    GAAAA    ---        --------TTAA    -   ATAAAACTGTTTAGTTCTTTCCTGTTAAAAAAATGGATAATATGGGAGTTAATTAATGAAACTTTTTCCAT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3810314

TACTCCCTCTGTCCCTAATTACTTGTCCACTTTTGAATTGGCACACCTATTAAGAAAACAATAATTGATATAGTGAGTTTACCATTTTGCCGCTATTAATTATGAAGTGGATGAATTAAAAACTTAATATTTTCAAGAAGCTCTACCTTTTTCAAAGTAATTAATTGAGGGTATAATAGGTAAAAAAATTGTCCTTTCTTGATTTGTCAAAATAGACAAGTAATTAGGGACAACTAAAAAAGGAAATGTGGACAAGTAATTAGGGACGGAGGGAGTA

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