SE3830315

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_8633
  • Solanum tuberosum
  • SE3830315
  • hAT
  • Hat39
  • chr12:9463300-9463943
  • CAAAGGAC
  • G

Secondary structure and sequence

TSD    TIR
5'



3' 
CAAA    C  T -  GTGAAAAGCGATCGCCTCGTCGCCAATGGCAAGAGGCGAGGCGAGGCGACCCTTCATCGCCTTTTACCTTTGTGGCGAGGCGATCTTCAAAAGGCGACGCCATGACGACAAAAGGCGAGAGGCAAGAAGCGAGAAAGGCTAGAAAGGCGTCGCCTTTTGTATTTTCTTTAAAAAAAGGCGACCAATTTAGGGGTTTTAAAAGTTTAAAAGGTAATTTTAGGGTTTTCGACTAGACTCCTCTGGCAACTAGCCAGACTTTTCCGGCGACTTCAAAGTCTAACCAATACATATTTCTTCTTTTCTTCTTC
    GGAC AG G TT                                                                                                                                                                                                                                                                                                                    
    |||| || | ||                                                                                                                                                                                                                                                                                                                    A
    GGAA AC G CA                                                                                                                                                                                                                                                                                                                    
  CA    -  - T  CAAAACCTGCCGTTTTCCCCTGTTCCCAGACGGAGCGGTGTTCCGCTCCGCTCGCCGCTCCACGAGCGGAAAAACTTCACGCCGTGGTAAATTATGGTTTTTAATTTTATAAATTAACGTATACATTTATTAGTTTGTTATTGTATAATCGTTAAAAAAGTTAAGTTTTTGATGTTTATCTATCATGAATGATTTTCAGATCTTGAACTTACTCTTTTTTATCTTGTTTTCAGTTTTGTTTCCATCTTCACTGAGATTTCAGACTACTTCTTCTTCTTCTTCCTTTTTCTTGTCTCCTTCTTCTTTAA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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