SE3810316

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_8634
  • Solanum tuberosum
  • SE3810316
  • Tc1/Mariner
  • St15
  • chr02:35909462-35909728
  • TA
  • TACTTCTTTTATCCTACAATAGTGATCTACTAT

Secondary structure and sequence

TSD    TIR
5'



3' 
          A   T        GA        TGAC    CATACTTTTTAAGAAATAATAAATAATATGGATAATATTACTATATTATTCTTTGACTTTATTAAATTTAATGATTTGAAAAATGTGTCAGATG
TACTTCTTTT TCC ACAATAGT  TCTACTAT    TTGA                                                                                              
|||||||||| ||| ||||||||  ||||||||    ||||                                                                                              A
ATGAGGGAGA AGG TGTTATCA  AGGTGATA    TGAT                                                                                              
          C   T        AC        ----    TTATATTAACAGGTTGTTATGAACAGGCTAAAATTTTTAGTTCTCTATTAAATGGAAAACATAGATAAAATAGGAACGATAATCTATAATAAAT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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