Plant MITE

SE3810317

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_8635
Solanum tuberosum
SE3810317
Tc1/Mariner
St3
chr05:26992241-26992508
TA
TACTCCCTCCGTCCAACAATACTTGTCCACTATT

Secondary structure and sequence

TSD TIR

5'

3'

         C           C    C       ------C       AGA    -  ACAATA    TCCACTTTATGAAATCCATGGATAATTTTTACACTTAGTTCCTAATTTACCTTTATCATTAATTATAGTCAT
TACTCCCTC GTCCAACAATA TTGT CACTATT       TAAAAAT   TGTC CA      CATG                                                                        
||||||||| ||||||||||| |||| |||||||       |||||||   |||| ||      ||||                                                                        T
ATGAGGGAG CAGGTTGTTAT AACA GTGATAA       ATGTGGG   TTCT TG      ATAT                                                                        
         A           C    A       CTGAACT       CAA    T  ------    TTAACTTTCCATTAAAATGATATAGTGGGAAACTTATATTATTTATGTTACAGAACTTTTTACATTATCACT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3810317

TACTCCCTCCGTCCAACAATACTTGTCCACTATTCTAAAAATAGATGTCCAACAATACATGTCCACTTTATGAAATCCATGGATAATTTTTACACTTAGTTCCTAATTTACCTTTATCATTAATTATAGTCATTTCACTATTACATTTTTCAAGACATTGTATTTATTATATTCAAAGGGTGATATAGTAAAATTACCTTTCAATTTATAGTTTCTTAACGGGTGTATCAAGTCAATAGTGAACAACTATTGTTGGACAGAGGGAGTA

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