SE3820318

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_8636
  • Solanum tuberosum
  • SE3820318
  • Mutator
  • M46
  • chr04:8450384-8451113
  • ATCCAAAAT
  • GAGAAAAGACATAAAGACCCCATTAAAGTTGTCT

Secondary structure and sequence

TSD    TIR
5'



3' 
ATCCAAAATA   A              C C             C  A   GCATAAAGACACCTTAACTTTCAAAGTGTCCTATCACCCCACAAAACTATTTTAATATCTTTGTAAATGGGCCATTTTGACCCATTTCCTCGTCTGGGTTGTTACCACGTACATGAGGCTCGTCATGCAGCGTTTTCACTGCCATGGGCCAGTTTAAAAGTGCCACGTGTCATTTTCTTTCTTTATTATTAATTATTTAATCACTTTATATCATCTTCCCCAAATTTAAACCCAAATAGCCATTGATAGCCCTAATTTTTCGATTTCATGGTTTTTTCCATAGCCCTACAGTAGCAATTACTCAAAAACACAACG
          GAG AAAGACATAAAGAC C ATTAAAGTTGTCT GT TTT                                                                                                                                                                                                                                                                                                                           
          ||| |||||||||||||| | ||||||||||||| || |||                                                                                                                                                                                                                                                                                                                            
          CTC TTTCTGTATTTCTG G TAGTTTCAACAGA AT TGA                                                                                                                                                                                                                                                                                                                           
ATAAAACCTA   A              T T             -  -   AAGGTTCACAGGGTAGTGGGGTGTTTTGATAAATTATAGCAACATTTACCCGGTAAAACTGGGTAAGGGAGCAGATACATCACCGCGCACAACGAGTGAGGGACACTATCTTAAGTTAAGCTGGGCTGGGCTGGGATAAGAAACTTCTTTTCAGTAGAAGAGGAAAAGAAAAGAATAAAGAGTTGAAAGGTATTTTAGACTTCTTTATCTTTTCAAAAGAGCGGCACAACCACAACTATTAGAGCAACAACTACACAGAATCACTTCTAAGAACCTCCCTGTTTCTTAACGGTAACAATCCTAAAATATCAAAAA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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