SE3830319

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_8637
  • Solanum tuberosum
  • SE3830319
  • hAT
  • Hat19
  • chr06:43479134-43479271
  • TTGTTGAA
  • AACTAAGTTGTGGGAACTCTTCACTTTCGAT

Secondary structure and sequence

TSD    TIR
5'



3' 
TTGTTG     A     -G   AC      ---CTT     GCCGCACC       G              G
      AACTA GTTGT  GGA  TCTTCA      TCGAT        CATGTCG ATTCTCCAAAAATA 
      ||||| |||||  |||  ||||||      |||||        ||||||| |||||||||||||| T
      TTGAT CAACG  CCT  AGAAGT      AGTTA        GTACAGT TAAGGGGTTTTTAT 
GAGTTG     A     AG   -A      TTTTTC     --ACCCAC       A              G
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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