Plant MITE

SE3850320

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_8638
Solanum tuberosum
SE3850320
PIF/harbinger
To6
chr08:18198838-18199073
TTA
AGGGGTCGTTTGGTGTGAGGGATAAG

Secondary structure and sequence

TSD TIR

5'

3'

TT              G  A        -AAT    A  GATGGGATAAGAAAATAGTGATGGGATAAAATTTTAGTATCTTGTTTGATTGTCATGTTTGGGATAATTTATCCCACCATT
  AGGGGTCGTTTGGT TG GGGATAAG    ACAT GT                                                                                 
  |||||||||||||| || ||||||||    |||| ||                                                                                  
  TCCCCAGTAAACCA AC CCTTGTTC    GGAT CT                                                                                 
AT              -  -        AATA    -  TAATCAATAGAACTCCAATCGAATTACCCTATTAAATAGGGTGGTACATATACCCTCTTGAATATGGTAGTGATACTATAT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3850320

TTAGGGGTCGTTTGGTGTGAGGGATAAGAATACATAGTGATGGGATAAGAAAATAGTGATGGGATAAAATTTTAGTATCTTGTTTGATTGTCATGTTTGGGATAATTTATCCCACCATTTATATCATAGTGATGGTATAAGTTCTCCCATATACATGGTGGGATAAATTATCCCATTAAGCTAACCTCAAGATAACTAATTCTAGGATAACTTGTTCCCAACCAAATGACCCCTTA

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