SE3820323

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_8641
  • Solanum tuberosum
  • SE3820323
  • Mutator
  • M2
  • chr08:31526327-31526673
  • TTTTATATT
  • TATATTGGAAAAATTACAGAAATCCCACCATTT

Secondary structure and sequence

TSD    TIR
5'



3'
TTT    -TT  AA              C  CCA   AGTTTACTT     -CATC     C  T        CA   CT CA          TTTTC    ATC   TT GTGTATCTCGCGCATCAGATTAATTTCTCTCGCGCATCAGATTAGTGTATCATGTATAAAATGTACATC
   TATA   GG  AAATTACAGAAATC CA   TTT         ATTAC     ATCCC TA AAGTTTTA  AAT  C  AAATCCCTCA     GCGC   AGA  A                                                                     
   ||||   ||  |||||||||||||| ||   |||         |||||     ||||| || ||||||||  |||  |  ||||||||||     ||||   |||  |                                                                      
   ATAT   CC  TTTAATGTCTTTAG GT   AAA         TAATG     TAGGG AT TTTAAAAT  TTA  G  TTTAGGGAGT     TTGC   ATG  T                                                                     
 TT    TTT  CG              T  ATG   ATTCCGTTT     TTAAA     A  -        -A   AT TC          -----    -CT   -- TATTATATTCGCGACTATGTAATTAGTAATTCATTCTATGTAATGTAAAATATGTACTATGTGATTAAA

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End