SE3820324

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_8642
  • Solanum tuberosum
  • SE3820324
  • Mutator
  • M3
  • chr08:1605049-1605413
  • TAGCTTTTT
  • GGGAAAAAGGATAAATATACCTTCGAACTATCATAAATGGTATGCAGATACCCTTCGTCATACTTTTGGGACATTGGTGCCCCTGTCGTCCAAAAACTAGAGGATATATGCCCTTTACTCTAACGGA

Secondary structure and sequence

TSD    TIR
5'



3' 
TAGCTTTTTTTTTTT                       C        A                                    G                                G              CT        AGACTAAATAGGG      TA  C                         A
               GGGAAAAAGGATAAATATACCTT GAACTATC TAAATGGTATGCAGATACCCTTCGTCATACTTTTGG ACATTGGTGCCCCTGTCGTCCAAAAACTAGAG ATATATGCCCTTTA  CTAACGGA             ACACGT  CG AATCTTATCCGTCGATCCGATATTT 
               ||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||  ||||||||             ||||||  || ||||||||||||||||||||||||| A
               TCCTTTTTCCTGTTTATATGGGG CTTGATAG ATTTACCATACGTCTATGGGAGGCAGTATGAAAACC TGTAACCACGGGGACGGCAGGTTTTTGATCTC TATATATGGGAAAT  GATTGCCT             TGTGCA  GT TTAGAATAGGTGGCTAGGCTGTAAA 
         TTTTTT                       A        C                                    -                                G              AT        ----------GTA      CA  A                         T
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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