Plant MITE

SE3820326

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_8644
Solanum tuberosum
SE3820326
Mutator
M8
chr03:18196589-18196914
TATTAATTA
ATTAATTAGGCATAATACATAAACATGACCCTTAACTTGTCTTCAACGGACAACTATG

Secondary structure and sequence

TSD TIR

5'

3'

 T      T                                TCT     G          CCCTCC       A  A           A                     A              CAT          A   AA      --------TA GA GCCA
  ATTAAT AGGCATAATACATAAACATGACCCTTAACTTG   TCAAC GACAACTATG      AACTTTG GT TGCACAAGTAG CACTTAAACTTGTATAAAATT AACAAGTAGACACA   GTCTTACATG CAT  TACATG          G  C    
  |||||| ||||||||||||||||||||||||||||||||   ||||| ||||||||||      ||||||| || ||||||||||| ||||||||||||||||||||| ||||||||||||||   |||||||||| |||  ||||||          |  |     
  TAATTA TCCGTATTATGTATTTGTACTGGGAATTGAAC   AGTTG CTGTTGATAC      TTGAAAC CA ACGTGTTCATC GTGAATTTGAACATATTTTAA TTGTTTATCTGTGT   TAGGATGTAC GTG  ATGTAC          C  G    
AT      -                                CAC     A          TGAAAA       C  C           C                     C              AAG          C   GG      TTTAAAAATA AG ATGC

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3820326

TATTAATTAGGCATAATACATAAACATGACCCTTAACTTGTCTTCAACGGACAACTATGCCCTCCAACTTTGAGTATGCACAAGTAGACACTTAAACTTGTATAAAATTAAACAAGTAGACACACATGTCTTACATGACATAATACATGTAGGACGCCACGTAGGACATAAAAATTTCATGTAGGGTGCCATGTAGGATGAATGTGTCTATTTGTTCAATTTTATACAAGTTTAAGTGCCTACTTGTGCACACCCAAAGTTAAAAGTCATAGTTGTCAGTTGACACCAAGTTAAGGGTCATGTTTATGTATTATGCCTATTAATTA

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