SE3820329

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_8647
  • Solanum tuberosum
  • SE3820329
  • Mutator
  • M8
  • chr12:1338108-1338420
  • TAAAATAAA
  • AGGCATAATACATAAATATGTCAATTAGCTTGGCTTCAAATCACATTTATGCCCTTCAACTTTGGGTGTGCACAAGTAGACACTTAAACTTATATAAAGTTGAACAAATAGACACACATGTCCTACATGGCATCCTACATGTCA

Secondary structure and sequence

TSD    TIR
5'



3' 
TAAAATAA                      AA              AA                                                 TTA      G        A        CAT   C   A      CC       ----  TT
        AGGCATAATACATAAATATGTC  TTAGCTTGGCTTCA  TCACATTTATGCCCTTCAACTTTGGGTGTGCACAAGTAGACACTTAAAC   TATAAA TTGAACAA TAGACACA   GTC TAC TGGCAT  TACATGT    CA  
        ||||||||||||||||||||||  ||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||   |||||| |||||||| ||||||||   ||| ||| ||||||  |||||||    ||  T
        TCCGTATTATGTATTTATACAG  AATTGAATCGAAGT  AGTGTAAATACGGGAAGTTGAGACCCATACGTGTTCATCTGTGAATTTG   ATATTT AACTTGTT ATCTGTGT   CAG ATG ACCGTG  ATGTGCA    GT  
AAATAAAA                      GA              AA                                                 TAC      G        C        ACT   A   C      TT       TCCT  TT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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