SE3820330

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_8648
  • Solanum tuberosum
  • SE3820330
  • Mutator
  • M50
  • chr10:42802418-42802581
  • GTGATTCAA
  • TGATTCAATGGGTTAATACCTCAGATGGTCACTCAACTATCCACTTTTGCCTCAGAAAGTCACTCAACTTTT

Secondary structure and sequence

TSD    TIR
5'



3' 
 G   T   A                                   C    G                 -------      AATTT
  TGA TCA TGGGTTAATACCTCAGATGGTCACTCAACTATCCA TTTT CCTCAGAAAGTCACTCA       ACTTTT     
  ||| ||| ||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||       ||||||     T
  ACT AGT GCCCAATTATGGAGTCTACCAGTGAGTTGATAGGT AAAA GGAGTCTTTCAGTGAGT       TGAAAA     
TA   T   -                                   C    A                 GTACCAC      ATCAC
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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