Plant MITE

SE3820333

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_8651
Solanum tuberosum
SE3820333
Mutator
M8
chr08:31243741-31244065
GTTCTATTA
GGCATAATACATAAAAATGACCTTTAACTTGGCGTAAGCTGGCAGCTATGACCTTTAACTTTGGGTGTGCACAAGTAGACACTTAAACTTGTATAAAATTGAACAAATAGACACATTCGTCCTACATGGCACCCTACATGG

Secondary structure and sequence

TSD TIR

5'

3'

GTTCTATTA               A      T          GTA   T          A                                                       A       A  C             --CCC       CAATT      C
         GGCATAATACATAAA ATGACC TTAACTTGGC   AGC GGCAGCTATG CCTTTAACTTTGGGTGTGCACAAGTAGACACTTAAACTTGTATAAAATTGAACAA TAGACAC TT GTCCTACATGGCA     TACATGG     TCATGT 
         ||||||||||||||| |||||| ||||||||||   ||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| || |||||||||||||     |||||||     |||||| C
         CCGTATTATGTATTT TACTGG AATTGAACCG   TCG CTGTTGATAC GGAGGTTGAAACTTACACGTGTTCATCTGTGAATTTGAACATATTTTAACTTGTT ATCTGTG AA CAGGATGTACCGT     GTGTATC     AGTACA 
 TTATCTTG               G      T          AAA   C          A                                                       C       C  A             ATTAT       -CTAC      T

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3820333

GTTCTATTAGGCATAATACATAAAAATGACCTTTAACTTGGCGTAAGCTGGCAGCTATGACCTTTAACTTTGGGTGTGCACAAGTAGACACTTAAACTTGTATAAAATTGAACAAATAGACACATTCGTCCTACATGGCACCCTACATGGCAATTTCATGTCCTACATGACATCCTATGTGTATTATGCCATGTAGGACAAACGTGTCTACTTGTTCAATTTTATACAAGTTTAAGTGTCTACTTGTGCACATTCAAAGTTGGAGGACATAGTTGTCCGCTAAAGCCAAGTTAATGGTCATGTTTATGTATTATGCCGTTCTATT

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